Instructions for installing R package dna_0.2-1.tar.gz in Linux:
This package can be installed from the linux command line creating a folder "~/myrlibrary" and by typing:
R CMD INSTALL -l '~/mylibrary' dna_0.2-0.tar.gz
and then starting R and typing
library(dna,lib.loc='~/myrlibrary')
Instructions for installing R package dna_0.2-1.zip in Windows:
This package can be installed in R by going to
Packages>Install package(s) for local zip file
and finding the zip file.
The package can then be loaded by going to
Packages>Load Package
and choosing dna
List of functions:
PLSnet - Computes the connectivity scores for a network based on partial least squares (PLS).
tdms - Tests for differential modular structures between two networks using PLS scores.
tdcind - Tests for differential connectivity of individual genes between two networks using PLs scores.
tdcclass - Tests for differential connectivity of a class of genes between two networks using PLS scores.
More detailed information about these functions are available through the R help files. For example, to view the help file for PLSnet, type help(PLSnet).